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ATAC-seq - Wikipedia
https://en.wikipedia.org/wiki/ATAC-seq
WEBATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) is a technique used in molecular biology to assess genome-wide chromatin accessibility. In 2013, the technique was first described as an alternative advanced method for MNase-seq , FAIRE-Seq and DNase-Seq . [1]
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Chromatin accessibility profiling by ATAC-seq | Nature Protocols
https://www.nature.com/articles/s41596-022-00692-9
WEBOct 26, 2020 · The assay for transposase-accessible chromatin using sequencing (ATAC-seq) provides a simple and scalable way to detect the unique chromatin landscape associated with a cell type and how it may...
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From reads to insight: a hitchhiker’s guide to ATAC-seq data …
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-1929-3
WEBFeb 3, 2020 · Here, we discuss the major steps in ATAC-seq data analysis, including pre-analysis (quality check and alignment), core analysis (peak calling), and advanced analysis (peak differential analysis and annotation, motif enrichment, footprinting, and nucleosome position analysis).
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ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide
https://pubmed.ncbi.nlm.nih.gov/25559105/
WEBJan 5, 2015 · Abstract. This unit describes Assay for Transposase-Accessible Chromatin with high-throughput sequencing (ATAC-seq), a method for mapping chromatin accessibility genome-wide. This method probes DNA accessibility with hyperactive Tn5 transposase, which inserts sequencing adapters into accessible regions of chromatin.
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ATAC-Seq for Chromatin Accessibility Analysis | Illumina
https://www.illumina.com/techniques/multiomics/epigenetics/atac-seq-chromatin-accessibility.html
WEBThe assay for transposase-accessible chromatin with sequencing (ATAC-Seq) is a popular method for determining chromatin accessibility across the genome. By sequencing regions of open chromatin, ATAC-Seq can help you uncover how chromatin packaging and other factors affect gene expression.
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Analytical Approaches for ATAC-seq Data Analysis - PMC
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8191135/
WEBAbstract. ATAC-seq, the assay for transposase-accessible chromatin using sequencing, is a quick and efficient approach to investigating the chromatin accessibility landscape.
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Transposition of native chromatin for fast and sensitive ... - Nature
https://www.nature.com/articles/nmeth.2688
WEBOct 6, 2013 · ATAC-seq captures open chromatin sites using a simple two-step protocol with 500–50,000 cells and reveals the interplay between genomic locations of open chromatin, DNA-binding proteins,...
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ATAC-seq: A Method for Assaying Chromatin Accessibility …
https://changlab.stanford.edu/atac-seq.pdf
WEBATAC-seq is compatible with a number of methods for cell separation and isolation, including cell sorting as well as disruption of intact tissues to cellular suspensions. The method has also worked well across many cell types and species.
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Application of ATAC-Seq for genome-wide analysis of the …
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8901173/
WEBFeb 21, 2022 · Here, we report the first implementation of single myofiber ATAC-Seq, which allows for the sequencing of an individual myofiber at a depth sufficient for peak calling and for comparative analysis of chromatin accessibility under …
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Complete Guide to Understanding and Using ATAC-Seq - Active …
https://www.activemotif.com/blog-atac-seq
WEBFeb 9, 2021 · This article discusses what ATAC-Seq is, it’s history, how it works, and some discoveries enabled by ATAC-Seq. What is ATAC-Seq? ATAC-Seq stands for Assay for Transposase-Accessible Chromatin with high-throughput sequencing. The ATAC-Seq method relies on next-generation sequencing (NGS) library construction using the …
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