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NCBI Virus - National Center for Biotechnology Information
https://www.ncbi.nlm.nih.gov/labs/virus/vssi/
WEB. NCBI Virus. is a community portal for viral sequence data from RefSeq, GenBank and other NCBI repositories. To find, retrieve and analyze data, please select an option below. Search by sequence. Use the NCBI BLAST™ tool to find similar viral nucleotide and protein sequences. Search by virus.
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About Us - National Center for Biotechnology Information
https://www.ncbi.nlm.nih.gov/labs/virus/vssi/docs/about/
WEBWhat is NCBI Virus? NCBI Virus is an integrative, value-added resource designed to support retrieval, display and analysis of a curated collection of virus sequences and large sequence datasets. We are a community portal for viral sequence data, and our goal is to increase the usability of data archived in GenBank and other NCBI repositories.
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Help | NCBI Virus - National Center for Biotechnology Information
https://www.ncbi.nlm.nih.gov/labs/virus/vssi/docs/help/
WEBWays to access NCBI Virus data. NCBI Virus BLAST™ tool. Search for sequences by virus name or taxonomy group. How do I find, view, analyze and download SARS-CoV-2 sequences and related metadata? Where can I find SARS-CoV-2 lineage-associated information? View and download specific virus sequence sets. Explore data with Visual …
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Complete genomes: Viruses - National Center for Biotechnology Information
https://www.ncbi.nlm.nih.gov/genomes/GenomesGroup.cgi?taxid=10239
WEBThe Viral Genomes Resource is a collection of viral genomic sequences that is a part of the Entrez Genomes, which provides curated sequence data and annotations of complete genomes to the scientific community.
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Help overview - National Center for Biotechnology Information
https://www.ncbi.nlm.nih.gov/genome/viruses/about/
WEBNCBI Viral Genomes Resource is a collection of virus genomic sequences that provides curated sequence data, related information and tools. It includes all complete viral genome sequences deposited in the International Nucleotide Sequence Database Collaboration (INSDC) databases, i.e. DDBJ, EMBL, and GenBank.
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NCBI Virus: Test drive our new SARS-CoV-2 interactive data dashboard!
https://ncbiinsights.ncbi.nlm.nih.gov/2020/12/03/sars-cov-2-dashboard/
WEBDec 3, 2020 · The NCBI Virus SARS-CoV-2 Data Hub is an NCBI Labs project that we are actively developing and may change rapidly. This resource supports open data and is available free on an easily-accessed web-based platform. Future enhancements to support SARS-CoV-2 research include: selecting sequences based on variations,
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Data for SARS-CoV-2 variants now available at NCBI
https://ncbiinsights.ncbi.nlm.nih.gov/2021/04/23/data-sars-cov-2-variants/
WEBApr 23, 2021 · SARS-CoV-2 variant search result with button to download a data package containing data for all SARS-CoV-2 genomes matching that variant lineage, B.1.1.7 in this case. Need command-line access? We have added a new lineage flag, –lineage, to the datasets command-line tool that allows you to get SARS-CoV-2 variant genomes (Figure …
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ViruSurf: an integrated database to investigate viral sequences
https://pubmed.ncbi.nlm.nih.gov/33045721/
WEBJan 8, 2021 · ViruSurf, available at http://gmql.eu/virusurf/, is a large public database of viral sequences and integrated and curated metadata from heterogeneous sources (RefSeq, GenBank, COG-UK and NMDC); it also exposes computed nucleotide and amino acid variants, called from original sequences.
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Introducing the new Virus Sequence Search Interface - NCBI …
https://ncbiinsights.ncbi.nlm.nih.gov/2018/01/16/viral-surveillance/
WEBJan 16, 2018 · NCBI Virus includes sequences from all virus groups including bacteriophages and supports several new functionalities. You can search for sequences using the virus-specific NCBI BLAST tool or perform virus sequence searches based on virus name or taxonomy.
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Bacterial & Viral Pathogen Resources - National Library of Medicine
https://www.nlm.nih.gov/ncbi/resource-lists/pathogen-resources.html
WEBApr 18, 2024 · NCBI Virus. A community portal for viral sequence data from RefSeq, GenBank and other NCBI repositories and to assist researchers in finding, retrieving and analyzing data. ... The NCBI Reference Sequence Database (RefSeq) is a comprehensive, integrated, non-redundant, well-annotated set of reference sequences including …
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